Im getting a little tired of people jumping to the phobia reason when pertinent points about the realities of travelling to the middle east and in particular, Dubai, are raised. The fact is that Qantas is now requiring people to travel even if only in transit to a country that does require strict adherence to rules that most of us would not even think of.
[RANT]What amazes me about the whole tone of comments in various threads on the EK deal is the constant reference of Qantas "requiring" people to do things or that they "now need to" this and that because of Qantas. Last time I looked Qantas has no power to compel anyone to do anything they don't want (unless you are already sitting on their aircraft).
There are a plethora of choices of getting to Europe, if people feel that strongly about these changes, they simply should take their business elsewhere and use one of those many other choices. Even if you want stick to Qantas and its OW partners, there are a still a whole heap of ways of getting to Europe with Qantas for some of the way and a one world partner for the rest - be it via BKK, SIN, HKG, MNL, CGK, PVG, NRT - or even JNB, EZE, LAX, DFW or JFK, using the services of QF & the onwards with BA, CX, JL, AB, RJ or even LA, IB or AA - with MH and UL to come! In fact it has often been, and probably will continue to be cheaper, particularly in economy, to buy a fare to point A (usually in Asia) and then from there to Europe - may be that is something worth looking at. Even on the same plane! It was often the case that two separate QF tickets (eg MEL-SIN-MEL and SIN-LHR-SIN) were cheaper than buying the exact same flights as a through fare. [\RANT]
Anyway, back to the concerns about the middle east, and Australians transitting the middle east and the conditions there. Are QF's customers really that different to EK's, QR's or EY's? People manage just fine already, with their existing what 13-15 services a day to Europe via DXB/AUH/DOH. It's not as if JQ will be taking hoards of people to DXB that normally head to Bali.
There will be some issues, but that happens anywhere and everywhere ... some people really should just stay at home.